PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G050100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 715aa    MW: 75613.3 Da    PI: 8.3042
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G050100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16558651294
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +kvl++sdv+++gr+vlpk+  e+h  ++k++ ++ + +ed  ++ +W++++++  ++ks++y+l+ ++ +Fv++n+L+egDf+v++  ++
  Brast01G050100.1.p 558 QKVLKQSDVGSLGRIVLPKEA-ETHlpELKTRDGISIPMEDiGTSLVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SD 644
                         79****************995.7888*999***********7777*******99777777777777.*******************9..55 PP

                         SEE..EE CS
                  B3  88 sefelvv 94 
                          ++++++
  Brast01G050100.1.p 645 VKGRYLI 651
                         5555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-23548648IPR015300DNA-binding pseudobarrel domain
CDDcd100151.68E-31555654No hitNo description
SuperFamilySSF1019367.72E-19556650IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.404557657IPR003340B3 DNA binding domain
SMARTSM010191.5E-12557657IPR003340B3 DNA binding domain
PfamPF023628.3E-14558649IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MDASAGSPPP PHSQQNHGGG GRPGKAPVGE IRAGEASPDD FLFAGDTFPS LPDFPCLSSP  60
SSSTFSSSSS SNSSSAFTAA AAATRGGEHA AAADDGIDAL ADLDQLLDFA SLSVPSWEDE  120
PLFPDDVGMM LEDAMSDDHK PPARHAADVS CRAAGKVAAA SGGVPGGEAS GGGAAEDLPR  180
FFMEWLTNNR DCISAEDLRS IRLKRSTIEA AAARLGGGRQ GTMQLLKLIL TWVQNHHLHK  240
KRLRVDATME MDAEPGGPHG GHHQQQQLPS PGANPGSYEF PAAAPEGISS WTMPYQQTAF  300
TPPSAYGGET QAAIYPNAAS TTTTTTGPYP FQQSCSTSSV VVSSQPFSPP PATDMQTAPA  360
GGSGSGNHSV PLVWPQQYAF PGGAPAGNSH PLPQPFAPGF AMPMCPQRAA GGTEPSATKE  420
ARKRRMARQR RLSSSLQHQR SQQLNLGQIQ IVPQPPEQPS PRSAHSAPVT LTPPPSGAWG  480
LWSSPPGCHQ VPVQAQAQQA QAQNPPPKSS KPKQQKPSAP NAGATKLDGS PQPPAASDQK  540
RQGANKPAAD KNLRFLLQKV LKQSDVGSLG RIVLPKEAET HLPELKTRDG ISIPMEDIGT  600
SLVWNMRYRF WPNNKSRMYL LENTGDFVRS NELQEGDFIV IYSDVKGRYL IRGVKVRPVQ  660
QDQAGKHKHG IPGNRGGASD VKTGPEDRGC KEKSPHGAQR SRQEATSSMM SVRI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0011401e-117AJ001140.1 Avena fatua mRNA for VIVIPAROUS 1 homologue transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232722.10.0PREDICTED: B3 domain-containing protein VP1 isoform X1
SwissprotP373980.0VIV_ORYSJ; B3 domain-containing protein VP1
TrEMBLA0A0Q3GJ350.0A0A0Q3GJ35_BRADI; Uncharacterized protein
STRINGBRADI2G58390.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-56B3 family protein